How do I install Sephera?

Copy the stdio config for Cursor, Claude Desktop, Claude Code, or VS Code on this page. It uses the publisher's install, not a PlugMCP proxy.

Does Sephera need an API key?

No required environment variable is listed on this record.

What transport does Sephera use?

Sephera runs locally over stdio.

When was Sephera last checked?

Last checked 2026-10-28. Answer "what breaks if I change this?" Reverse dependency analysis, cycle detection, and token-budgeted context packs. Rust CLI with built-in MCP server.

Servidor MCP Sephera

Sephera

Know what breaks before you touch it.

You are about to edit a shared module. Which files depend on it?

grep finds text matches, not call paths. Your IDE guesses. An LLM hallucinates a confident wrong answer.

Sephera builds a real dependency graph from your actual import / use / #include statements, then answers that question exactly.

cargo install sephera

The graph is checked against real repositories

A dependency tool that reports confident nonsense is worse than no tool. So the numbers are measured on nine real projects at pinned commits — one or two per supported language — asserted in CI, and reproducible:

python scripts/fetch_corpus.py      # clone the nine repositories
python scripts/measure_accuracy.py --verify

repository  files  internal  self-refs  unresolved  cycles  cfg-gated
----------  -----  --------  ---------  ----------  ------  ---------
      axum    307      1596         70           1      20         86
     flask     83       188          6           0      44          0
   express    141       159          0           0       0          0
       vue    527      1890          0           1     205          0
       gin     99        31          0           0       0          0
      gson    264      1085          0           0      25          0
       fmt     78       158          0           0       2        218
      curl   1125      3087          0           0       7       1638
    pytest    274       870          4           0      91          0

unresolved counts imports meant for this project that could not be placed to a file — the honest measure of what the tool failed at. self-refs are references a file makes to itself, counted apart because a use super::*; in a test module says nothing about how files depend on each other. cfg-gated counts edges that only compile when a #[cfg] is on, so the number is not quietly inflated by dependencies a default build does not have.

The axum row is the honest one. An earlier version reported 66 unresolved paths and 54 cycles on it. Those were module-tree artifacts — a parent declaring a child and the child naming its parent with super:: — not dependencies anyone could act on, and this README advertised two of them as bugs found in this repository's own source. The graph now reports 1 and 20.

That cycle count went up by one when it went down by nineteen. Fixing the artifact also removed the mod child; edges from the graph entirely, which had been hiding real rings: one of the twenty is response/mod.rs and test_helpers/mod.rs importing each other, which no edit can undo. Cycle detection now drops declaration edges by kind, where the blast radius keeps them.

The last unresolved paths fell one class at a time, and every class turned out to be a way real code says something the resolver had not learned to hear: imports of files the project's own ignore rules mark as generated, C and C++ includes behind preprocessor conditionals, Python names bound on every branch of a module-level conditional, Rust item paths spelled with ::, and #[macro_export] macros. Seven of the nine repositories now sit at zero, and the two holdouts sit at one each, for reasons that are properties of the code rather than of the resolver. One is a Vue import of a file the sfc-playground synthesises at runtime — it does not exist in the repository, and no in-repo evidence says otherwise. The other is axum's JsonLines, a real struct declared inside a pin_project! macro invocation: tree-sitter does not parse the inside of a macro token tree into items, so the declaration index honestly has no entry for it. It was carried to zero for a while by a neighbouring bug — the importing statement testifying that its own name was bound — and when that was fixed the count went back to saying so. Both stay counted rather than classified away.

Getting there was mostly measurement rather than design. Reading import statements by splitting text produced paths like typing as t, pbkdf2-password')(, and as origin } from './b'; treating every use as a re-export made a path resolve to the file that wrote it; and applying a name lookup to unqualified paths resolved every example's first use axum::Router to the example itself, inventing 934 self-edges. Each is a commit message with the count that caught it.

See it work

You are about to change parser.rs. Which files break?

A blast radius listing the four files that depend on src/parser.rs

Four files. Three import names from it; the fourth only declares mod parser;, which still breaks when you delete or rename it.

That is the whole answer, and it took one command.

The recording runs on a five-file project in docs/demo/fixture rather than on this repository, for two reasons. The report has to fit one screen: on a 1,400-file repository the summary scrolls away before the reader sees it. And the output is fixed, so the recording still shows the same four files as this repository grows.

It is rendered from a committed capture of real output, not screen-recorded, so it can be re-made:

sephera impact src/parser.rs --path docs/demo/fixture > scripts/fixtures/impact-query.md
python scripts/make_graph_demo.py impact

The full report is a separate command. impact answers the blast radius and stops; graph answers it and shows every edge, the cycles, and the resolver's own accounting of what it could not place. It is a different question on a different file — this repository, not the fixture:

A reverse dependency query answering which files depend on one file

sephera graph --path . --what-depends-on crates/sephera_context/src/types.rs --format markdown

# Dependency Graph Report

**Base path:** `.`

**Query:** `depends_on:crates/sephera_context/src/types.rs`

## Summary

| Metric | Value |
|--------|-------|
| Files analyzed | 43 |
| Internal edges | 250 |
| External edges | 140 |
| Self-references (excluded above) | 16 |
| Declared dependencies | 45 |
| Local crate edges | 0 |
| Standard library edges | 85 |
| Circular dependencies | 0 |

## Blast radius for `crates/sephera_context/src/types.rs`

**7 files import it directly.**

| File | Imports from it |
|------|------------------|
| `crates/sephera_context/src/builder.rs` | `super::types::ContextDiffMetadata`, `super::types::ContextDiffSelection`, `super::types::ContextFile`, `super::types::ContextLanguageSummary`, `super::types::ContextMetadata`, `super::types::ContextReport`, `super::types::SelectionClass` |
| `crates/sephera_context/src/candidate.rs` | `super::types::SelectionClass` |
| `crates/sephera_context/src/excerpt.rs` | `super::types::ContextExcerpt`, `super::types::ContextFile`, `super::types::SelectionClass` |
| `crates/sephera_context/src/focus.rs` | `super::types::SelectionClass` |
| `crates/sephera_context/src/grouping.rs` | `super::types::ContextFile`, `super::types::ContextGroupKind`, `super::types::ContextGroupSummary` |
| `crates/sephera_context/src/lib.rs` | `self::types`, `types::ContextDiffMetadata`, `types::ContextDiffSelection`, `types::ContextExcerpt`, `types::ContextFile`, `types::ContextGroupKind`, `types::ContextGroupSummary`, `types::ContextLanguageSummary`, `types::ContextMetadata`, `types::ContextReport`, `types::SelectionClass` |
| `crates/sephera_context/src/ranker.rs` | `super::types::SelectionClass` |

**35 further files reach them indirectly**, through the files above.

## Dependencies

| Package | Kind | Version | Import paths |
|---------|------|---------|--------------|
| `std` | stdlib | unknown | 81 |
| `anyhow` | declared | 1.0.102 | 19 |
| `tempfile` | declared | 3.27.0 | 10 |
| `rmcp` | declared | 1.3.0 | 9 |
| `arbitrary` | undeclared | unknown | 4 |
| `libfuzzersys` | undeclared | unknown | 3 |
| `clap` | declared | 4.6.0 | 1 |
| `serde` | declared | 1.0.228 | 1 |

## Most Imported Files

| File | Imported by |
|------|-------------|
| `crates/sephera_runtime/src/lib.rs` | 44 |
| `crates/sephera_context/src/lib.rs` | 40 |
| `crates/sephera_context/src/types.rs` | 27 |
| `crates/sephera_symbols/src/lib.rs` | 24 |
| `crates/sephera_cli/src/output.rs` | 17 |
| `crates/sephera_runtime/src/context.rs` | 10 |
| `crates/sephera_cli/src/context_config.rs` | 6 |
| `crates/sephera_context/src/candidate.rs` | 6 |
| `crates/sephera_gui/src/loc.rs` | 6 |
| `crates/sephera_cli/src/output/symbols.rs` | 5 |

## Most Importing Files

| File | Imports |
|------|---------|
| `crates/sephera_cli/src/run.rs` | 36 |
| `crates/sephera_mcp/src/server.rs` | 19 |
| `crates/sephera_context/src/builder.rs` | 18 |
| `crates/sephera_context/src/lib.rs` | 18 |
| `crates/sephera_cli/src/output.rs` | 11 |
| `crates/sephera_mcp/src/render/tests.rs` | 10 |
| `crates/sephera_runtime/src/lib.rs` | 10 |
| `crates/sephera_cli/src/lib.rs` | 9 |
| `crates/sephera_cli/src/output/symbols.rs` | 9 |
| `crates/sephera_mcp/src/render.rs` | 9 |

## Dependency Diagram

```mermaid
graph LR
    n0["configure.rs"]
    n1["context_config.rs"]
    n2["lib.rs"]
    n3["output.rs"]
    n4["context_json.rs"]
    n5["context_markdown.rs"]
    n6["profiles.rs"]
    n7["symbols.rs"]
    n8["run.rs"]
    n9["loc_table.rs"]
    n10["merge_corpus.rs"]
    n11["builder.rs"]
    n12["candidate.rs"]
    n13["excerpt.rs"]
    n14["focus.rs"]
    n15["grouping.rs"]
    n16["lib.rs"]
    n17["ranker.rs"]
    n18["types.rs"]
    n19["context_builder.rs"]
    n20["context_line_range.rs"]
    n21["lib.rs"]
    n22["loc.rs"]
    n23["lib.rs"]
    n24["render.rs"]
    n25["excerpt.rs"]
    n26["groups.rs"]
    n27["metadata.rs"]
    n28["tests.rs"]
    n29["server.rs"]
    n30["tests.rs"]
    n31["context.rs"]
    n32["lib.rs"]
    n33["lib.rs"]
    n34["lookup.rs"]
    n35["tests.rs"]
    n36["build_context_report.rs"]
    n37["render_context_markdown.rs"]
    n38["render_loc_table.rs"]
    n39["loc.rs"]
    n40["mod.rs"]
    n41["symbols.rs"]
    n42["main.rs"]
    n0 --> n32
    n1 --> n32
    n2 --> n0
    n2 --> n1
    n2 --> n3
    n2 --> n8
    n3 --> n4
    n3 --> n5
    n3 --> n6
    n3 --> n7
    n4 --> n16
    n5 --> n16
    n6 --> n1
    n7 --> n33
    n8 --> n32
    n8 --> n33
    n8 --> n0
    n8 --> n1
    n8 --> n3
    n9 --> n2
    n10 --> n32
    n11 --> n12
    n11 --> n13
    n11 --> n14
    n11 --> n15
    n11 --> n17
    n11 --> n18
    n12 --> n14
    n12 --> n18
    n13 --> n12
    n13 --> n18
    n14 --> n18
    n15 --> n18
    n16 --> n11
    n16 --> n12
    n16 --> n13
    n16 --> n14
    n16 --> n15
    n16 --> n17
    n16 --> n18
    n17 --> n12
    n17 --> n18
    n19 --> n16
    n20 --> n16
    n21 --> n22
    n22 --> n32
    n23 --> n24
    n23 --> n29
    n24 --> n16
    n24 --> n25
    %% ... and 35 more edges
```

Nine files reach code_loc.rs, five of them importing it directly. You now know your blast radius before opening the file - not after CI turns red.

The query filters to the blast radius, which is why the report above shows ten files rather than the whole repository. core.rs is among them because mod code_loc; is a real edge: delete the file and the crate root stops building.

It finds real bugs

Run the full graph scan on this repository:

sephera graph --path . --format markdown

Real output:

# Dependency Graph Report

**Base path:** `.`

## Summary

| Metric                | Value |
|-----------------------|-------|
| Files analyzed        | 179   |
| Internal edges        | 636   |
| External edges        | 809   |
| Self-references (excluded above) | 76 |
| Declared dependencies | 210   |
| Local crate edges     | 152   |
| Standard library edges| 217   |
| Circular dependencies | 0     |

## Dependencies

| Package            | Kind     | Version   | Import paths |
|--------------------|----------|-----------|--------------|
| `std`              | stdlib   | unknown   | 217 |
| `sepheracore`      | workspace| unknown   | 145 |
| `anyhow`           | declared | 1.0.102   | 65  |
| `tempfile`         | declared | 3.27.0    | 38  |
| `comfytable`       | declared | 7.2.2     | 12  |
| `clap`             | declared | 4.6.0     | 10  |

The three numbers that used to be one are now three: 152 edges reach a crate in this workspace and 217 reach the standard library, so the 809 "external" edges are mostly other people's code. That is what makes the table answer "which dependency do I bump" rather than just "how many edges are there".

Cycles are found by iterative DFS over the resolved import graph, with back-edge detection and deduplication so each cycle is reported once. This repository reports 0, and it took real fixes to get there: the cycles it used to report were module-tree artifacts — a parent declaring a child and the child naming its parent with super:: — not dependencies you could act on. An early version of this tool advertised two "found in its own source tree" cycles for exactly that reason.

A cycle is only reported when every link in it is something an edit can remove. mod child; is filtered out of cycle detection by kind, because no change to either file breaks the pair — but it is kept in the blast radius, because editing the child really does force the parent to rebuild. Keeping those two answers separate is what took axum from 54 cycles to 19 rather than merely suppressing them.

Where Sephera fits

Being straight about this, because the crowded ones do not:

Capability	Sephera	repomix	cloc / tokei
Reverse dependencies — what breaks if I edit this?	✅	❌	❌
Circular dependency detection	✅	❌	❌
Graph export — DOT, Mermaid, XML, JSON	✅	❌	❌
Token-budgeted context packs	✅	✅	❌
Tree-sitter AST compression	✅	✅	❌
Pack a repo into one AI-friendly file	✅	✅	❌
MCP server	✅	✅	❌
Claude Code plugins / Agent Skills	❌	✅	❌
Browser & VS Code extensions	❌	✅	❌
Code / comment / blank per-language LOC	✅	❌	✅
Single static Rust binary, no runtime deps	✅	❌ (Node)	✅
Remote repo URL, no manual clone	✅	✅	❌

Read that honestly: if you want a repo flattened into one XML file with a browser extension and Claude Code plugins, use repomix. It is excellent and far more popular.

Use Sephera when you need the dependency structure — what imports this, what would break, are there cycles, and how do I fit this within a token budget.

Install

cargo install sephera

No Rust toolchain? Grab a prebuilt binary from GitHub Releases for Windows, macOS, or Linux.

Current release line: v0.5.0 (pre-1.0).

The commands

`impact` — what breaks if you change this file

The question a reviewer or a pre-commit hook asks before an edit. Answers it directly, so you do not have to know that graph has a flag for it.

# What transitively imports this file? 42 files do.
sephera impact crates/sephera_context/src/types.rs

# Only the 7 files that import it directly
sephera impact crates/sephera_context/src/types.rs --depth 1

# Several files at once, widest first; the graph is built once
sephera impact crates/sephera_context/src/types.rs crates/sephera_cli/src/run.rs

# Machine-readable, for a script
sephera impact crates/sephera_context/src/types.rs --format json

# Fail the build when one file reaches more than 50 dependents
sephera impact crates/sephera_context/src/types.rs --fail-on 50

--fail-on exits 2, which is deliberately different from the 1 that means the analysis could not run. A broken install and a violated rule look the same in a log otherwise, and that is where someone adds --ignore-failures to the workflow and then never notices either.

One name, not the whole file (new in 2.0). --symbol narrows the report from the file to a single name it exports: the files that import that name, the files that import the file's namespace wholesale (reported apart, as may-use rather than use), and the files downstream of those. On this repository, crates/sephera_core/src/declarations.rs has 32 dependents as a file; its DeclaredNames type is named by exactly one of them. Both numbers are true — they answer different questions.

# Who imports this one type, as opposed to anything else in the file?
sephera impact crates/sephera_core/src/declarations.rs --symbol DeclaredNames

# The threshold compares against the symbol's users, not the file's
sephera impact crates/sephera_core/src/declarations.rs --symbol DeclaredNames --fail-on 10

Cross-language dependencies — Python ↔ Rust, through PyO3

A graph built one language at a time has a hole where Python imports a module that only exists as a Rust extension: the import reads as external, the Rust file looks imported by nobody, and both blast radii are wrong. Sephera harvests the boundary from the Rust side — the #[pymodule] name and the names it registers (wrap_pyfunction!, add_class) — and joins Python imports onto it. import myext lands on the file declaring the module; from myext import add lands on the file declaring add. JNI is the other shape: no import on either side, just a Java native method and a C function sharing a mangled name (Java_com_acme_Native_add) — the two spellings are paired and the edge is added. The edges carry kind ffi, and every command above — impact, why, review, dead — crosses the boundary without knowing it is there.

`affected-tests` — which tests answer for a change (new in 2.0)

The follow-up question: not just what breaks, but what to run. The same walk, filtered to test files, each with its distance from the changed file — plus the commands that run them.

# Which test files would notice a change here, closest first?
sephera affected-tests crates/sephera_graph/src/blast_radius.rs

# Fail the build when a change reaches no test at all
sephera affected-tests crates/sephera_graph/src/blast_radius.rs --require-tests

# Machine-readable, plan included
sephera affected-tests crates/sephera_graph/src/blast_radius.rs --format json

--run executes the plan: Cargo targets for Rust integration tests, package directories for Go, files for pytest. Ecosystems with no honest mapping are listed as manual rather than given an invented command.

`why` — why one file depends on another (new in 2.0)

The follow-up to impact: the radius says a file is in it, this says through which imports. The shortest chain connecting two files, with the import path as written at every hop — Bazel's somepath question, asked of a source tree.

# Why does the CLI's runner depend on the declaration index?
sephera why crates/sephera_cli/src/run.rs crates/sephera_core/src/declarations.rs

# Machine-readable: connected, hop_count, and every hop with its imports
sephera why crates/sephera_cli/src/run.rs crates/sephera_core/src/declarations.rs --format json

The chain is the shortest one on purpose. A longer route also connects the files, but it is not why they are coupled — the coupling would survive its removal. When no chain exists the command says so and still succeeds; a path that matches no file in the analysis is the error.

`coupling` — the coupling the graph cannot see (new in 2.0)

Every other command reads the source. This one reads the history, and reports where the two disagree: pairs of files that change together in commit after commit while neither imports the other. That coupling is real — an editor of one who does not know about the other breaks something — and invisible to source analysis, because there is no statement to read.

# Which file pairs change together with no import between them?
sephera coupling --path .

# A longer window and a stricter bar
sephera coupling --path . --commits 1000 --min-co-changes 5

Pairs joined by an import in either direction are excluded (that coupling is impact's to report), and commits touching more than fifty files in the tree are skipped, because a mass reformat couples everything and means nothing. Each pair carries a containment: the share of the quieter file's commits that also touched the other file, where 1.0 means it has never changed without the other. Run against this repository, the strongest pairs are the CLI's runner with the MCP server — every feature lands in both, and the two crates may not import each other by design — and the declaration index with the Rust plugin that consumes it.

`review` — the whole change, before it lands

The three questions above, fused over the change you are about to make. The change is the working tree read against HEAD — or against a branch with --against — and for every file it touches the report gives the blast radius, the tests that reach it, and a warning for each file that history keeps changing with it but the change leaves behind: "you changed A; B has moved with A seven times and is not in this change." Between the changed files and those warnings sits a fourth answer: what broke by name — the symbols the change removed or reshaped, joined to the files that still name them, measured exactly as breaking measures them.

# Review everything uncommitted
sephera review --path .

# Review a whole branch before pushing it
sephera review --path . --against origin/master

A file the change deletes is reported as absent rather than dropped — a deletion is the change whose dependents matter most, and the report says the graph cannot name them instead of implying there were none.

`risk` — where a change is most likely to hurt

The same three readings, asked about the whole tree as a standing ranking: dependents × churn × (1 + coupled partners). A product, because the danger compounds; the coupling term amplifies rather than creates, because a file nothing depends on is not made risky by its partners. Every factor is printed beside the score, auditable against impact, the history, and coupling itself.

sephera risk --path .

On this repository the head of the ranking is the CLI's own argument definitions — every feature touches them, they change constantly, and six hidden partners move with them. That is what a hotspot looks like.

`dead` — the files no entry point reaches

Every other command starts from a file and walks outward; dead starts from the tree's entry points — test files, main.* / lib.rs / build.rs, __main__.py, bin/cmd/examples/benches/scripts directories, index.* — and walks forward, reporting what the walk never reaches. A file with no importers is not excused by that fact: an orphaned cluster imports itself, and dead means unreachable from positive evidence of entry. Entry points a path cannot show are named with --root, and the report lists the roots it used.

sephera dead --path .

Its first run on this repository found a stale duplicate of the runtime crate's root that no mod statement declares — imported by nothing, importing five files, reviewed as if it were alive.

`breaking` — what a change breaks, named by symbol

A diff between two declaration indexes says what vanished or changed shape; this command joins each break to the files in the newer tree that still name it. A removed name nobody imports breaks nothing — a removed name with nine importers breaks nine files, and those files are the report. --from names the older side; without --to, the newer side is the working tree, which is the form a branch review takes before it is pushed. Each entry also carries a fix suggestion when the newer tree says something actionable: where a removed name moved, when exactly one other file declares it, or the call shape a changed signature now takes.

sephera breaking --path . --from origin/master

`diff` — the whole API changelog, additions included

breaking only names what breaks consumers. This one names everything that changed in the API surface between two refs: added, removed, kind-changed, and signature-changed. A new symbol breaks nothing, so it never appears in a breaking report — but a changelog without additions hides half the release. A symbol that moved files reads as a removal plus an addition, because a diff that guesses identity is a diff that lies.

sephera diff --path . --from origin/master

`simulate` — dry-run a rename before doing it

A rename is the most common refactor and the one taken on faith: the tool renames the declaration and every import it can find, and the breakage shows up in CI. This one measures the rename beforehand — which files must update their import, and whether the new name already exists where it would land (a duplicate definition blocks the rename outright; a consumer that already owns the name warns instead). Nothing is edited, and even a blocked rename exits 0: a blocked rename is an answer, not a failure.

sephera simulate crates/sephera_graph/src/blast_radius.rs --symbol BlastRadius --to BlastRadiusSim --path .

`behavior` — the changes that still compile but change behaviour

A compiler catches a broken call. A test suite catches a changed result — when it covers the path. This one catches the class neither does: a call whose arguments were swapped but still type check, and a numeric constant whose value changed while still used. It is deliberately narrow — symmetric bodies are skipped, string constants are never flagged, and a Rust swap that would not type check is a compile error, not a silent change — because the general question is undecidable and a detector that guesses trains a team to ignore it. There is no --fail-on: the detector's precision is measured by its corpus, and a gate on an unproven detector would punish asking.

sephera behavior --path . --from origin/master

`archaeology` — where a symbol has been

git log follows a file, so a rename that also moves the file breaks the thread. This one follows the symbol: every rename and move, its former names, and who changed it. Identity is proven by consumer continuity, never by name similarity — a symbol in one commit is the same symbol as one in an older commit when exactly one declared symbol there has the same direct consumers. A rename that also changes the consumer set in the same commit is not proven and ends the trail, and an unconsumed symbol's rename cannot be proven at all, so the trail stops as ambiguous rather than guessing.

sephera archaeology crates/sephera_graph/src/blast_radius.rs --symbol BlastRadius --path .

`untested` — the symbols no test exercises, without running anything

Coverage tools answer this by running the tests and watching what executes. This one answers it statically: a test file is a root, the files its imports reach are the code the tests can execute, and a symbol is exercised when a reached file names it. A symbol a test names itself is direct; one named only by code the tests reach is indirect; what no reached file names is untested — not uncovered-by-a-run, but unreachable from every test in the tree.

sephera untested --path .

`test-priority` — which untested symbol to test next

untested says which symbols no test exercises. This one ranks them by what hurts most: downstream × churn × (1 + coupled partners), the same product risk uses, with file-level dependents replaced by symbol-level downstream — the files importing that symbol specifically. The ranking lists the full untested set, ranked, never filtered: a symbol with zero downstream scores 0 and ranks last, but stays listed, because dropping it would hide work. The score is a ranking heuristic, not a probability.

sephera test-priority --path .

`schema-impact` — what a schema change breaks, named by consuming file

breaking answers for code: which symbols broke, joined to their consumers. This one answers for schemas: a .proto file changes between two refs, and the report joins each changed element — a renamed field, a removed enum value, a reshaped rpc method — to the in-repo Go and Python files that consume exactly that element, through the generated-code boundary. Field numbers are the identity anchor, so a rename with the same number and type is proven, not guessed; consumers carry evidence tiers, and only proven consumers fail --fail-on. A name-match in an importing file is flagged weaker evidence and never gates.

sephera schema-impact --path . --from origin/master

`merge` — the merge git would complete cleanly but that breaks the build

Git compares lines, so two branches that touch different files merge without complaint — even when one side removes a symbol and the other side adds a consumer of it. This command compares the fork point against both sides and reports each contradiction by symbol: removals and kind changes against new consumers, and two sides reshaping the same symbol differently, are proven; signature changes against new consumers warn, because without call-site shapes the tool cannot prove the new call matches the old shape. --fail-on counts proven conflicts only, and a consumer kept since the fork point is never a conflict — it breaks because of the contract change alone, which breaking already reports.

sephera merge --path . --ours HEAD --theirs origin/master

`guard` — a seatbelt for coding agents (new in 2.0)

Wire it as a PreToolUse hook and every agent edit is measured before it happens. The hook payload comes in on stdin; the decision — allow, or deny when the blast radius reaches the limit — goes out as JSON on stdout, and a denial also exits 2.

# Judge one file by hand, the way a harness would
sephera guard --file crates/sephera_graph/src/blast_radius.rs --path . --max-dependents 50

The measurements are also MCP tools (impact, affected_tests, why, coupling), so an agent can ask before editing — guard exists for the moment before it thinks to ask.

`skill` — the workflow an agent follows, not just the tools it calls

MCP tools give an agent hands; a skill gives it judgment. This one encodes the change-safety workflow: check the blast radius before editing and stop at the threshold, re-check every file the change newly touches, read the breaking section first before committing, fix a break by its suggestion, and gate the merge on breaking symbols that still have consumers. Install it into a project and any agent with skills support follows it.

sephera skill --print

sephera skill install copies it into the project's agent-skills directory instead of printing.

`graph` — dependency structure and blast radius

Works on Rust, Python, TypeScript, JavaScript, Go, Java, C, and C++.

# Full dependency report
sephera graph --path .

# Human-readable with Mermaid diagram
sephera graph --path . --format markdown

# Blast radius: everything that transitively imports a file
sephera graph --path . --what-depends-on crates/sephera_context/src/types.rs

# Limit how far the impact spreads
sephera graph --path . --what-depends-on crates/sephera_context/src/types.rs --depth 1

# What does this change reach? Widest blast radius first.
sephera graph --path . --diff origin/master --format markdown

# Scope analysis to a subtree, export for Graphviz
sephera graph --path . --focus crates/sephera_core --format dot --output deps.dot

# Analyze any public repo without cloning it yourself
sephera graph --url https://github.com/owner/repo --format markdown

--what-depends-on traverses the graph in reverse from the target, so you get real transitive dependents rather than direct importers.

--diff answers the pull-request question: it reports the blast radius of every file the change touched, widest first. The graph is built once and each changed file is measured against it, so the cost does not scale with the size of the diff. Deleted files are skipped and listed separately — a file that no longer exists has no blast radius.

Enforcing it in CI

Three thresholds turn a report into a gate. Each prints its report as usual and changes only the exit code.

# Fail on an import cycle. This repository has none, so it exits 0.
sephera graph --path . --fail-on-cycles 1

# Fail when the resolver cannot place a project's own import paths.
# Also none here, so also exits 0.
sephera graph --path . --fail-on-unresolved 1

# Fail when one file reaches more than 40 dependents.
# `run.rs` has 1, so this exits 0.
sephera impact crates/sephera_cli/src/run.rs --fail-on 40

`context` — token-budgeted packs for LLMs

# Focus a subtree, compress, and cap the budget
sephera context --path . --focus crates/sephera_core --compress signatures --budget 32k

# Build a review pack from Git changes
sephera context --path . --diff HEAD~1 --budget 32k

# Machine-readable output
sephera context --path . --format json --output reports/context.json

# Pack a file with its dependency chain behind it, not a bag of ranked files
sephera context --path . --focus crates/sephera_graph/src/risk.rs --budget 8k --closure

With --closure, the pack is built over the import graph: each file's dependency chain is packed directly behind it, ahead of unrelated files that ranked below it, and the metadata counts the files closure pulled in. A packer without a graph can rank files; it cannot promise that what a packed file references is in the pack.

AST compression (--compress signatures or skeleton) uses Tree-sitter to keep function signatures, types, imports, and trait declarations while replacing bodies with { ... }.

Measured on 12 uncompressed Rust files from this repo:

File	Raw	`signatures`	Reduction
`line_slices.rs`	1,294	160	87.6%
`ignore.rs`	2,634	534	79.7%
`ranker.rs`	968	218	77.5%
`budget.rs`	1,410	433	69.3%
`reader.rs`	1,394	469	66.4%
`config.rs`	1,399	525	62.5%
aggregate	15,488	6,602	57.4%

The API surface survives — signatures, types, imports, and traits are all still there, only bodies are replaced.

Where that number stops applying. The figure above is whole files, chosen for having large function bodies — the case compression is built for. Two other cases behave differently, and both were measured rather than assumed:

--compress compresses excerpts, not whole files. An excerpt is already mostly declarations, so compressing it saved 0.4% across this repository (108,815 → 108,396 tokens). It is not the lever for the excerpt budget.
A file that is almost entirely declarations can grow: graph/plugins/mod.rs went from 1,161 to 2,026 tokens, because { ... } markers and retained signatures can exceed the bodies they replace. 4 of 238 files grew in that run.

The gain scales with how much of a file is body. Check before relying on it.

Where it does not help: files with no implementation to strip. core.rs and lib.rs are almost entirely mod declarations and type definitions, and came out 2–3% larger. Compression pays off in proportion to how much of a file is executable body, so point it at logic-heavy directories rather than expecting a flat rate.

Real pack metadata from this repo:

| Field                  | Value            |
|------------------------|------------------|
| Focus paths            | crates/sephera_core/src/core/runtime |
| Budget tokens          | 8000             |
| Estimated total tokens | 7475             |
| Files considered       | 148              |
| Files selected         | 13               |

Packs are deterministic — same inputs, same bytes out — which makes them usable in CI.

`loc` — per-language line counts

Per-language line counts for axum: Rust 31912 code lines, 9841 comment, 5830 empty, totalling 429 files across 8 languages in about 30 ms

Code, comment, and empty-line counts per language, from Tree-sitter rather than pattern matching, so a // inside a string is not a comment. It reads the repository's own .gitignore and .sepheraignore while it walks.

That is axum at commit 8530676, fetched by python scripts/fetch_corpus.py. The image is generated by scripts/render_loc_table.py rather than pasted as text, for a specific reason: byte counts change with line endings, and a checkout without core.symlinks turns axum's README.md — a symlink — into a fourteen-byte text file, which is then one more file and one more Markdown line. Both belong to your machine, not to the tool, so your numbers will differ slightly and that is expected. The caption in the image states which checkout produced it.

If you only need raw counts, cloc and tokei are fine — use Sephera when you want the next step.

loc also speaks machine, so it can go straight into a dashboard or a CI step:

sephera loc --path . --format json --output reports/loc.json
sephera loc --path . --format csv
sephera loc --path . --format markdown

`mcp` — expose it all to your AI agent

sephera mcp

Serves loc, symbols, context, graph, impact, affected_tests, why, coupling, review, risk, and dead as tools over stdio for Claude Desktop, Claude Code, Cursor, and any MCP-compatible client. impact is the one an agent should call before editing a file: it shares its counting with the command, so the answer an agent gets and the answer you get are the same one.

{
  "mcpServers": {
    "sephera": {
      "command": "sephera",
      "args": ["mcp"]
    }
  }
}

Configuration

Stop typing the same flags. .sephera.toml holds defaults, named profiles, and whole commands under one word:

# Read by every command: loc, symbols, context, graph, impact, watch
[project]
ignore = ["vendor", "benchmarks/**"]
progress = "never"

# Each command's own flags
[loc]
format = "markdown"
output = "reports/loc.md"

[graph]
depth = 2
exclude_types = true

[impact]
fail_on = 40

# A second set of defaults, per command
[profiles.review.context]
diff = "origin/master"
budget = "32k"

# A whole long invocation, under one word
[aliases.who]
command = "graph"
what_depends_on = "crates/sephera_context/src/types.rs"
format = "markdown"

sephera loc

With a [profiles.ci.*] block in place, a profile is one flag — and a name that does not exist is an error rather than a silent no-op:

$ sephera graph --profile ci

The alias is a word from your config file, so neither can be run here:

$ sephera who                 # graph --what-depends-on src/lib.rs --format markdown

Three things make this predictable. Explicit flags still win, because config is applied by rewriting the command line ahead of what you typed. [project] exists because a repository that wants vendor out of its analysis should say so once, not repeat --ignore on every command — which is how a project ends up with three ignore lists and no idea which one a number came from. And a key that no section accepts is an error naming the correction, not a setting that quietly does nothing: ignroe is refused with "did you mean ignore?", because a typo that did nothing is invisible until a number comes out wrong and you cannot work out why.

--no-config ignores the file, and --config <file> reads a specific one.

Scope

Sephera is deliberately narrow. It is not an agent runtime, not a hosted service, and not a provider-specific wrapper. It is a local, dependency-light analysis binary.

Documentation: https://sephera.vercel.app
Workspace: sephera_cli, sephera_core, sephera_mcp, sephera_tools
Development checks: cargo fmt --all --check, cargo clippy --workspace --all-targets --all-features -- -D warnings, cargo test --workspace

License

GPL-3.0

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Server facts

Tools

Questions

How do I install Sephera?

Does Sephera need an API key?

What transport does Sephera use?

When was Sephera last checked?

Documentation

Sephera

The graph is checked against real repositories

See it work

It finds real bugs

Where Sephera fits

Install

The commands

impact — what breaks if you change this file

Cross-language dependencies — Python ↔ Rust, through PyO3

affected-tests — which tests answer for a change (new in 2.0)

why — why one file depends on another (new in 2.0)

coupling — the coupling the graph cannot see (new in 2.0)

review — the whole change, before it lands

risk — where a change is most likely to hurt

dead — the files no entry point reaches

breaking — what a change breaks, named by symbol

diff — the whole API changelog, additions included

simulate — dry-run a rename before doing it

behavior — the changes that still compile but change behaviour

archaeology — where a symbol has been

untested — the symbols no test exercises, without running anything

test-priority — which untested symbol to test next

schema-impact — what a schema change breaks, named by consuming file

merge — the merge git would complete cleanly but that breaks the build

guard — a seatbelt for coding agents (new in 2.0)

skill — the workflow an agent follows, not just the tools it calls

graph — dependency structure and blast radius