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Finding Open Access Papers

B

by brycewang-stanford4.6k

Communication

Use Unpaywall API to find free full-text versions of paywalled papers

Install

The skill file stays in the publisher's repository.

Paste the copied command in a terminal. It installs this SKILL.md into that agent.

npx skills add brycewang-stanford/Auto-Empirical-Research-Skills --skill finding-open-access-papers -a cursor -y

Download skill skills/05-kthorn-research-superpower/research/finding-open-access-papers/SKILL.md on GitHub

Related skills

name: Finding Open Access Papers description: Use Unpaywall API to find free full-text versions of paywalled papers when_to_use: When paper behind paywall. When PMC full text not available. When DOI resolution hits paywall. When need free access to paper. Before giving up on full text access. version: 1.0.0

Finding Open Access Papers

Overview

Use Unpaywall to find legally available open access versions of papers that appear to be behind paywalls.

Core principle: Many paywalled papers have free versions (preprints, author manuscripts, institutional repositories). Unpaywall finds them.

When to Use

Use this skill when:

DOI resolution hits a paywall
Paper not available in PubMed Central
Publisher site requires subscription
Need full text for highly relevant paper (score ≥7)

Use BEFORE giving up on full text access

Unpaywall API

Simple REST API - no authentication required for reasonable usage

Basic Request

curl "https://api.unpaywall.org/v2/DOI?email=YOUR_EMAIL"

Parameters:

DOI - The paper's DOI (URL-encoded if needed)
email - User's email (required, for courtesy/contact)

IMPORTANT: Ask user for their email at the start of research session. Do NOT use placeholder emails like or .

curl "https://api.unpaywall.org/v2/10.1038/[email protected]"

{
  "doi": "10.1038/nature12373",
  "title": "Paper Title",
  "is_oa": true,
  "best_oa_location": {
    "url": "https://europepmc.org/articles/pmc3858213",
    "url_for_pdf": "https://europepmc.org/articles/pmc3858213?pdf=render",
    "version": "publishedVersion",
    "license": "cc-by",
    "host_type": "repository"
  },
  "oa_locations": [
    {
      "url": "https://europepmc.org/articles/pmc3858213",
      "version": "publishedVersion"
    },
    {
      "url": "https://arxiv.org/abs/1234.5678",
      "version": "submittedVersion"
    }
  ]
}

# Try DOI first
curl -L "https://doi.org/10.1234/example.2023"

# If paywall detected (403, subscription required, etc):
curl "https://api.unpaywall.org/v2/10.1234/[email protected]"

# Parse JSON response
response=$(curl -s "https://api.unpaywall.org/v2/DOI?email=EMAIL")

# Check if OA available
is_oa=$(echo $response | jq -r '.is_oa')

if [ "$is_oa" = "true" ]; then
  # Get best PDF URL
  pdf_url=$(echo $response | jq -r '.best_oa_location.url_for_pdf // .best_oa_location.url')

  # Download
  curl -L -o "papers/paper.pdf" "$pdf_url"
fi

⚠️ Paper behind paywall at publisher
✓ Found open access version via Unpaywall!
   Source: Europe PMC (published version)
   PDF: https://europepmc.org/articles/pmc3858213?pdf=render
   → Downloading...

⚠️ Paper behind paywall at publisher
✗ No open access version found via Unpaywall
   Options:
   - Request via institutional access
   - Contact authors for preprint
   - Continue with abstract only

Stage 2: Fetch Full Text

Try in order:
A. PubMed Central (free full text)
B. DOI resolution → If paywall, try Unpaywall
C. Unpaywall direct lookup
D. Preprints (bioRxiv, arXiv)

# 1. Try PMC
pmc_result=$(curl "https://eutils.ncbi.nlm.nih.gov/...")
if has_pmc_fulltext; then
  fetch_pmc
  exit 0
fi

# 2. Try DOI
doi_result=$(curl -L "https://doi.org/$doi")
if is_paywall; then
  # 3. Try Unpaywall
  unpaywall_result=$(curl "https://api.unpaywall.org/v2/$doi?email=$EMAIL")
  if has_oa; then
    fetch_unpaywall_pdf
    exit 0
  fi
fi

# 4. No full text available
report_no_fulltext

import requests
import time

def find_open_access(doi, email):
    """
    Find open access version via Unpaywall
    Returns: (pdf_url, version, source) or (None, None, None)
    """
    url = f"https://api.unpaywall.org/v2/{doi}"
    params = {"email": email}

    try:
        response = requests.get(url, params=params, timeout=10)
        response.raise_for_status()
        data = response.json()

        if not data.get('is_oa'):
            return None, None, None

        best_loc = data.get('best_oa_location')
        if not best_loc:
            return None, None, None

        pdf_url = best_loc.get('url_for_pdf') or best_loc.get('url')
        version = best_loc.get('version', 'unknown')
        source = best_loc.get('host_type', 'unknown')

        return pdf_url, version, source

    except Exception as e:
        print(f"Error checking Unpaywall for {doi}: {e}")
        return None, None, None

# Usage
doi = "10.1038/nature12373"
pdf_url, version, source = find_open_access(doi, "[email protected]")

if pdf_url:
    print(f"Found {version} at {source}")
    print(f"PDF: {pdf_url}")
    # Download PDF
    response = requests.get(pdf_url)
    with open(f'papers/{doi.replace("/", "_")}.pdf', 'wb') as f:
        f.write(response.content)
else:
    print("No open access version found")

time.sleep(0.1)  # Rate limiting

{
  "error": "true",
  "message": "DOI not found"
}

Task	Command
Check if OA available	`curl "https://api.unpaywall.org/v2/DOI?email=EMAIL"`
Get best PDF URL	Parse `.best_oa_location.url_for_pdf`
List all OA sources	Parse `.oa_locations[]`
Check version type	Look at `.version` field
Download PDF	`curl -L -o paper.pdf "$pdf_url"`