Galaxy

io.github.galaxyproject

MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows

Add to Cursor Add to VS Code Run on PlugMCP

1{2  "mcpServers": {3    "io.github.galaxyproject-galaxy-mcp": {4      "command": "uvx",5      "args": [6        "galaxy-mcp==1.3.0"7      ],8      "env": {9        "GALAXY_URL": "<value>",10        "GALAXY_API_KEY": "<secret>"11      }12    }13  }14}

.cursor/mcp.jsonMCP server

Transport: stdio
Status: Local

Power your agent

Add this server

The publisher's own command. Not a PlugMCP endpoint.

Add to Cursor Add to VS Code Run on PlugMCP

Host a copy with our keys and logs.

Local command

uvx galaxy-mcp==1.3.0

Credentials from the publisher

GALAXY_URL — URL of the Galaxy instance to connect to (e.g., https://usegalaxy.org)
GALAXY_API_KEY — API key for authenticating with the Galaxy instance

Claude Code has no install link for a local command. Copy the command below and run it in a terminal.

shClaude Code

1GALAXY_URL=<value> GALAXY_API_KEY=<secret> claude mcp add io.github.galaxyproject-galaxy-mcp -- uvx galaxy-mcp==1.3.0

Run in a terminal.

jsonClaude Desktop

1{2  "mcpServers": {3    "io.github.galaxyproject-galaxy-mcp": {4      "command": "uvx",5      "args": [6        "galaxy-mcp==1.3.0"7      ],8      "env": {9        "GALAXY_URL": "<value>",10        "GALAXY_API_KEY": "<secret>"11      }12    }13  }14}

claude_desktop_config.json

Local · pypiPublisher installStep-by-step: add this in Claude

Remote URL or a command on your machine? How the two installs differ

Run on PlugMCP

Host a copy with our keys and logs.

A new server you create. It is not this listing's official endpoint. Use the publisher install when you want their URL and their credentials.

Launch

Server facts

Local

Transport: stdio
Version: 1.3.0
API key: GALAXY_URL, GALAXY_API_KEY
Last checked: 2026-10-26

Stars: —
Tools: —
Uptime: —

Tools

No tool list yet. Remote servers get one after the first health check.

FAQ

Questions

How do I install Galaxy?

Copy the stdio config for Cursor, Claude Desktop, Claude Code, or VS Code on this page. It uses the publisher's install, not a PlugMCP proxy.

Does Galaxy need an API key?

The publisher lists these environment variables: GALAXY_URL, GALAXY_API_KEY.

What transport does Galaxy use?

Galaxy runs locally over stdio.

When was Galaxy last checked?

Last checked 2026-10-26. MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows

From the publisher

Documentation

README is not crawled yet. Open the repository