Folklore Clinical Variant Interpretation MCP

io.github.helena-bioinformatics

Bioinformatics MCP for genomic variant interpretation, gene-disease evidence and literature.

Add to Cursor Add in Claude Add to VS Code Run on PlugMCP

1{2  "mcpServers": {3    "io.github.helena-bioinformatics-folklore": {4      "url": "https://api.helena.bio/folklore/v1/mcp",5      "headers": {}6    }7  }8}

.cursor/mcp.jsonMCP server

Transport: http
Tools: 11
Status: Live

Power your agent

Add this server

The publisher's own URL. Not a PlugMCP endpoint.

Add to Cursor Add in Claude Add to VS Code Run on PlugMCP

Host a copy with our keys and logs.

Server URL

https://api.helena.bio/folklore/v1/mcp

The Claude button above opens Claude with the name and URL filled in. You still confirm it there.

shClaude Code

1claude mcp add --transport http io.github.helena-bioinformatics-folklore https://api.helena.bio/folklore/v1/mcp

Run in a terminal.

jsonClaude Desktop

1{2  "mcpServers": {3    "io.github.helena-bioinformatics-folklore": {4      "command": "npx",5      "args": [6        "-y",7        "mcp-remote",8        "https://api.helena.bio/folklore/v1/mcp"9      ]10    }11  }12}

claude_desktop_config.json

Remote · HTTPPublisher installStep-by-step: add this in Claude

Remote URL or a command on your machine? How the two installs differ

Run on PlugMCP

Host a copy with our keys and logs.

A new server you create. It is not this listing's official endpoint. Use the publisher install when you want their URL and their credentials.

Launch

Server facts

Live

Transport: http
Version: 1.6.0
Last checked: 2026-10-31

Uptimelast 1 checks

Stars: —
Tools: 11
Uptime: 100%

11 tools

Tools

tools/listVoice mode preview

Tool	What it does
get_gene_disease_associations	Find diseases associated with one human gene for bioinformatics and clinical genomics research. Accepts an exact gene symbol or HGNC identifier. Returns ClinGen gene-disease validity assertions, relation-specific inheritance, source reports and snapshot provenance. Preserves conflicting and limited
get_gene_profile	Read one source-qualified gene profile after resolve_gene and explicit candidate selection when needed. Returns the same immutable snapshot as the public Folklore gene page: overview, disease validity, dosage, mechanisms, transcripts and native assemblies, constraint, ClinVar summaries/consequences,
get_gene_section	Read or continue one section of the current public gene profile using its exact gene_id, snapshot_id and opaque section cursor. Preserves source records, assembly/release, coverage, total versus observed_total, count units and source provenance. Do not merge snapshots, count mirrored assertions as i
get_publication_details	Retrieve the complete public bibliographic record for one PMID from Folklore's PubMed-derived genetics corpus. Returns the full abstract, authors, journal metadata, publication and MeSH terms, gene and variant mentions, retraction status, and PubMed/PMC links. Use after literature search when a user
resolve_gene	Find the authoritative public human gene identity for a symbol, previous symbol, alias, HGNC, Ensembl or NCBI Gene identifier. Returns exact, alias, ambiguous, not_found or withdrawn with all candidates and identity_snapshot_id. Never choose an ambiguous candidate or substitute a withdrawn identity.
search_disease_genes	Find human genes associated with a disease for genomic analysis and rare-disease research. Accepts an exact MONDO identifier or a disease-name search. Returns matching ClinGen gene-disease validity assertions with inheritance, source reports and snapshot provenance. Name searches may match multiple
search_gene_literature	Retrieve the public gene page live literature capture after authoritative gene resolution. Uses the canonical gene context and existing Literature Mining ranking. Returns publications, source links, match labels, capture time/hash, degradation and gene/snapshot/sort-bound cursors. This live capture
search_literature_corpus	Semantically search the public scientific Literature Corpus by a natural-language question. A question may include one or more PMID, DOI or PMCID references; those publications become exact anchors for finding related experiments, evidence and concepts across the corpus. Also accepts genes, variants
search_variant_evidence	Interpret this variant, explain what this HGVS means, or review this VUS. Use for human genomic variant analysis within bioinformatics workflows, including review of an already identified WGS/WES variant. Use when a user asks to classify or interpret pathogenicity, review a VUS, check available Clin
search_variant_literature	Resolve one public GRCh38 germline variant and retrieve relevant publications from Folklore's PubMed-derived genetics corpus. Exact variant mentions rank ahead of broader gene associations. Use when a user asks what has been published about a variant, gene or associated condition. Associations do no
support_helena	Learn how an agent can support or spread Helena's free public scientific infrastructure through the separate Helena Good MCP. This is an explicit opt-in information action. It does not initiate payment, create a relay, or change any Folklore scientific result.

FAQ

Questions

How do I install Folklore Clinical Variant Interpretation MCP?

Copy the http config for Cursor, Claude Desktop, Claude Code, or VS Code on this page. It uses the publisher's install, not a PlugMCP proxy.

Does Folklore Clinical Variant Interpretation MCP need an API key?

No required environment variable is listed on this record.

What transport does Folklore Clinical Variant Interpretation MCP use?

Folklore Clinical Variant Interpretation MCP is reached over HTTP.

When was Folklore Clinical Variant Interpretation MCP last checked?

Last checked 2026-10-31. Bioinformatics MCP for genomic variant interpretation, gene-disease evidence and literature.

From the publisher

Documentation

README is not crawled yet. Open the repository

Folklore Clinical Variant Interpretation MCP

io.github.helena-bioinformatics

Bioinformatics MCP for genomic variant interpretation, gene-disease evidence and literature.

Add to Cursor Add in Claude Add to VS Code Run on PlugMCP

GitHub Website

Add to Cursor Add in Claude Add to VS Code Run on PlugMCP

1{2  "mcpServers": {3    "io.github.helena-bioinformatics-folklore": {4      "url": "https://api.helena.bio/folklore/v1/mcp",5      "headers": {}6    }7  }8}

.cursor/mcp.jsonMCP server

Transport: http
Tools: 11
Status: Live

Power your agent

Add this server

The publisher's own URL. Not a PlugMCP endpoint.

Add to Cursor Add in Claude Add to VS Code Run on PlugMCP

Host a copy with our keys and logs.

Server URL

https://api.helena.bio/folklore/v1/mcp

The Claude button above opens Claude with the name and URL filled in. You still confirm it there.

shClaude Code

1claude mcp add --transport http io.github.helena-bioinformatics-folklore https://api.helena.bio/folklore/v1/mcp

Run in a terminal.

jsonClaude Desktop

1{2  "mcpServers": {3    "io.github.helena-bioinformatics-folklore": {4      "command": "npx",5      "args": [6        "-y",7        "mcp-remote",8        "https://api.helena.bio/folklore/v1/mcp"9      ]10    }11  }12}

claude_desktop_config.json

Remote · HTTPPublisher installStep-by-step: add this in Claude

Remote URL or a command on your machine? How the two installs differ

Run on PlugMCP

Host a copy with our keys and logs.

A new server you create. It is not this listing's official endpoint. Use the publisher install when you want their URL and their credentials.

Launch

Server facts

Live

Transport: http
Version: 1.6.0
Last checked: 2026-10-31

Uptimelast 1 checks

Stars: —
Tools: 11
Uptime: 100%

11 tools

Tools

tools/listVoice mode preview

Tool	What it does
get_gene_disease_associations	Find diseases associated with one human gene for bioinformatics and clinical genomics research. Accepts an exact gene symbol or HGNC identifier. Returns ClinGen gene-disease validity assertions, relation-specific inheritance, source reports and snapshot provenance. Preserves conflicting and limited
get_gene_profile	Read one source-qualified gene profile after resolve_gene and explicit candidate selection when needed. Returns the same immutable snapshot as the public Folklore gene page: overview, disease validity, dosage, mechanisms, transcripts and native assemblies, constraint, ClinVar summaries/consequences,
get_gene_section	Read or continue one section of the current public gene profile using its exact gene_id, snapshot_id and opaque section cursor. Preserves source records, assembly/release, coverage, total versus observed_total, count units and source provenance. Do not merge snapshots, count mirrored assertions as i
get_publication_details	Retrieve the complete public bibliographic record for one PMID from Folklore's PubMed-derived genetics corpus. Returns the full abstract, authors, journal metadata, publication and MeSH terms, gene and variant mentions, retraction status, and PubMed/PMC links. Use after literature search when a user
resolve_gene	Find the authoritative public human gene identity for a symbol, previous symbol, alias, HGNC, Ensembl or NCBI Gene identifier. Returns exact, alias, ambiguous, not_found or withdrawn with all candidates and identity_snapshot_id. Never choose an ambiguous candidate or substitute a withdrawn identity.
search_disease_genes	Find human genes associated with a disease for genomic analysis and rare-disease research. Accepts an exact MONDO identifier or a disease-name search. Returns matching ClinGen gene-disease validity assertions with inheritance, source reports and snapshot provenance. Name searches may match multiple
search_gene_literature	Retrieve the public gene page live literature capture after authoritative gene resolution. Uses the canonical gene context and existing Literature Mining ranking. Returns publications, source links, match labels, capture time/hash, degradation and gene/snapshot/sort-bound cursors. This live capture
search_literature_corpus	Semantically search the public scientific Literature Corpus by a natural-language question. A question may include one or more PMID, DOI or PMCID references; those publications become exact anchors for finding related experiments, evidence and concepts across the corpus. Also accepts genes, variants
search_variant_evidence	Interpret this variant, explain what this HGVS means, or review this VUS. Use for human genomic variant analysis within bioinformatics workflows, including review of an already identified WGS/WES variant. Use when a user asks to classify or interpret pathogenicity, review a VUS, check available Clin
search_variant_literature	Resolve one public GRCh38 germline variant and retrieve relevant publications from Folklore's PubMed-derived genetics corpus. Exact variant mentions rank ahead of broader gene associations. Use when a user asks what has been published about a variant, gene or associated condition. Associations do no
support_helena	Learn how an agent can support or spread Helena's free public scientific infrastructure through the separate Helena Good MCP. This is an explicit opt-in information action. It does not initiate payment, create a relay, or change any Folklore scientific result.

FAQ

Questions

How do I install Folklore Clinical Variant Interpretation MCP?

Copy the http config for Cursor, Claude Desktop, Claude Code, or VS Code on this page. It uses the publisher's install, not a PlugMCP proxy.

Does Folklore Clinical Variant Interpretation MCP need an API key?

No required environment variable is listed on this record.

What transport does Folklore Clinical Variant Interpretation MCP use?

Folklore Clinical Variant Interpretation MCP is reached over HTTP.

When was Folklore Clinical Variant Interpretation MCP last checked?

Last checked 2026-10-31. Bioinformatics MCP for genomic variant interpretation, gene-disease evidence and literature.

From the publisher

Documentation

README is not crawled yet. Open the repository